Author: | |
---|---|
Release: | $Id$ |
Date: | December 09, 2013 |
Tags: | Python |
As of biopython 1.5.6, the MAST parser is broken.
a MAST entry.
parse verbose MAST output.
write a motif from counts to outfile.
Counts should be a numpy matrix with nalphabet columns and motif_width rows.
output logodds matrix in MAST format.
output counts matrix in tomtom format.
output counts with columns as motif positions and rows as alphabet.
write a motif defined by a collection of sequences to outfile.