Author: | Andreas Heger |
---|---|
Release: | $Id$ |
Date: | December 09, 2013 |
Tags: | Python |
read cufflinks 1.0.3 output in infile stream.
returns a two-level dictionary mapping with levels track and contig.
Bases: tuple
Locus(locus_id, contig, strand, start, end, transcript_ids, transcripts)
Alias for field number 1
Alias for field number 4
Raises ValueError if the value is not present.
Alias for field number 0
Alias for field number 3
Alias for field number 2
Alias for field number 5
Alias for field number 6
Bases: tuple
Tracking(transfrag_id, locus_id, ref_gene_id, ref_transcript_id, code, transcripts)
Alias for field number 4
Raises ValueError if the value is not present.
Alias for field number 1
Alias for field number 2
Alias for field number 3
Alias for field number 5
Alias for field number 0
alias of Transfrag
parse .tracking output file from cuffcompare
returns iterator with list of loci.
parse .loci output file from cuffcompare
returns iterator with list of loci.