Author: | Andreas Heger |
---|---|
Release: | $Id$ |
Date: | December 09, 2013 |
Tags: | Python |
The Pipeline module contains various utility functions for parsing MACS output.
Bases: tuple
MacsPeak(contig, start, end, length, summit, tags, pvalue, fold, fdr)
Alias for field number 0
Alias for field number 2
Alias for field number 8
Alias for field number 7
Raises ValueError if the value is not present.
Alias for field number 3
Alias for field number 6
Alias for field number 1
Alias for field number 4
Alias for field number 5
iterate over peaks.xls file and return parsed data. The fdr is converted from percent to values between 0 and 1.
Bases: tuple
Macs2Peak(contig, start, end, length, summit, pileup, pvalue, fold, fdr, name)
Alias for field number 0
Alias for field number 2
Alias for field number 8
Alias for field number 7
Raises ValueError if the value is not present.
Alias for field number 3
Alias for field number 9
Alias for field number 5
Alias for field number 6
Alias for field number 1
Alias for field number 4
iterate over peaks.xls file and return parsed data. The fdr is converted from percent to values between 0 and 1.