===========================
Using CGAT tools - Recipes
===========================

In this section you will find representative examples for using tools developed in 
CGAT. The recipes presented aim to provide intuitive real-life examples of CGAT script use for
the analysis of genomic datasets. If there is a tool in the CGAT collection for which you
would like a use case then please post a request on the `CGAT users group`_ website. 

.. toctree::
   :maxdepth: 2

   recipes/gat
   recipes/nfkb_profile
   recipes/lncrna_cpg
   recipes/metagenome_contigs_kmers

.. _CGAT users group: https://groups.google.com/forum/?fromgroups#!forum/cgat-user-group