Using CGAT tools - Recipes

In this section you will find representative examples for using tools developed in CGAT. The recipes presented aim to provide intuitive real-life examples of CGAT script use for the analysis of genomic datasets. If there is a tool in the CGAT collection for which you would like a use case then please post a request on the CGAT users group website.

• Testing for Functional enrichment
• What is the binding profile of NFKB across gene models?
  • Visulazing ChIP-seq read coverage across NFKB binding intervals
• Assessing CpG content in long non-coding RNA promoters
• Clustering metagenomic contigs on tetranucleotide frequency